Journal: Experimental and Therapeutic Medicine

Article Title: Expression of platelet-derived growth factor in the vascular walls of patients with lower extremity arterial occlusive disease

doi: 10.3892/etm.2015.2275

Figure Lengend Snippet: Reagents used in the study.

Article Snippet: Multi-functional DNA Gel Extraction kit II (Spin-Column) , BioTeke Corporation, Beijing, China.

Techniques: RNA Extraction, Gel Extraction

Journal: Cell

Article Title: Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome

doi: 10.1016/j.cell.2020.08.007

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: ​ REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and Virus Strains Bifidobacterium longum ATCC ATCC 55813 Lachnospiraceae sp. 2_1_58FAA BEI Resources HM-161, HMP ID 0991 Lachnospiraceae sp. 1_4_56FAA BEI Resources HM-154, HMP ID 0988 Hungatella hathewayi DSM DSM 13479 Chemicals, Peptides, and Recombinant Proteins RNAlater stabilization solution Invitrogen AM7020 Tryptamine hydrochloride Millipore Sigma CAS# 343–94-2 Hypoxanthine Millipore Sigma CAS# 68–94-0 Critical Commercial Assays Amplex Red Xanthine/Xanthine Oxidase Assay Kit Thermo Fisher {"type":"entrez-protein","attrs":{"text":"A22182","term_id":"89506","term_text":"pir||A22182"}} A22182 Deposited Data Mendeley dataset, supplemental data I-VI This paper https://doi.org/10.17632/29n2z5r5ph.3 Microbiome data This paper European Nucleotide Archive, PRJEB37924 Metabolomics data This paper MetaboLights repository, MTBLS1396 Transcriptome and methylome data This paper Gene Expression Omnibus, {"type":"entrez-geo","attrs":{"text":"GSE146853","term_id":"146853"}} GSE146853 Experimental Models: Organisms/Strains Germ-free mice Taconic Farms Swiss Webster Software and Algorithms Maaslin2 Huttenhower lab http://huttenhower.sph.harvard.edumaaslin BURST Knights lab https://zenodo.org/record/806850 SHOGUN Knights lab https://github.com/knights-lab/SHOGUN Other Code used for metagenome and metabolome data analysis This study https://gitlab.com/rubenmars/ibs-multi-omics-code Code used for correlation networks This study https://github.com/mhoutti/ibs_network Open in a separate window KEY RESOURCES TABLE Longitudinal sampling limits heterogeneity seen in cross-sectional microbiome studies Alteration in the gut microbiome and microbial metabolites underlie IBS and symptom flares Data integration reveals effect of microbial metabolites on gastrointestinal function Purine starvation is identified as a possible therapeutic target in IBS

Techniques: Recombinant, Expressing, Software